biomcp

BioMCP simplifies the process of navigating through various biomedical data sources by allowing users to execute a single query that reaches multiple APIs and databases. Researchers, clinicians, and agents can utilize a consistent command grammar to search for information, pivot between different data types, and analyze studies without the need to reconfigure their workflows for each source. The tool offers compact, evidence-oriented results that integrate live public data with local study analytics. With features such as literature searching across platforms like PubTator3 and Europe PMC, the ability to pivot between genes, drugs, and diseases seamlessly, and local study analysis capabilities, BioMCP enhances the research experience. Users can follow citation trails, enrich data using g:Profiler, and batch multiple queries in a single command, making it a powerful resource for biomedical research.

{
  "mcpServers": {
    "biomcp": {
      "command": "npx",
      "args": [
        "-y",
        "@modelcontextprotocol/server-biomcp"
      ]
    }
  }
}